YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9802353
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGMFQAERL KLKRSMAKKL LVFAPIIAIL YGFIAPVGYL VNNAYNWWYV MIFPGLLTLF  60
   61 AALINTYEEK KLHYRAVFPL PISLRKFWFE KIFITVYYLN FSNGVLWIIT VLLNTFILPN 120
  121 YGKDYTYTVG ELALASLVII VTTLWQIPFC LWLTKRIGFT ITLIINLMSN FILGVVFATT 180
  181 SCWWLCPYSW GIRLMVPILK ILPSGLKAGI AGAPSLPTSF WSIVISLCLA VILFVSLTVL 240
  241 SASWFEKQEV K

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	46	0.84
Transmembrane Helix	47	67	0.94
Cytoplasmic	68	92	0.91
Transmembrane Helix	93	113	0.90
Non-Cytoplasmic	114	131	0.75
Transmembrane Helix	132	153	0.88
Cytoplasmic	154	162	0.76
Transmembrane Helix	163	185	0.87
Non-Cytoplasmic	186	219	0.85
Transmembrane Helix	220	242	0.92
Cytoplasmic	243	251	0.78