YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17064784, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVLSECG FRPLPRFYPK HTTSFASNPK PTFKFNPPLK PPSSLLNSRY GFYSKTRNWA  60
   61 LNVATPLTTL QSPSEEDTER FDPVAPPPFN LADIRAAIPK HCWVKNPWMS MSYVVRDVAI 120
  121 VFGLAAVAAY FNNWLLWPLY WFAQGTMFWA LFVLGHDCGH GSFSNDPRLN SVAGHLLHSS 180
  181 ILVPYHGWRI SHRTHHQNHG HVENDESWHP LPESIYKNLE KTTQMFRFTL PFPMLAYPFY 240
  241 LWNRSPGKQG SHYHPDSDLF LPKEKKDVLT STACWTAMAA LLVCLNFVMG PIQMLKLYGI 300
  301 PYWIFVMWLD FVTYLHHHGH EDKLPWYRGK EWSYLRGGLT TLDRDYGWIN NIHHDIGTHV 360
  361 IHHLFPQIPH YHLVEATEAA KPVLGKYYRE PKNSGPLPLH LLGSLIKSMK QDHFVSDTGD 420
  421 VVYYEADPKL NGQRT

Type	Start	End	Confidence
Cytoplasmic	1	112	0.98
Transmembrane Helix	113	131	0.92
Non-Cytoplasmic	132	139	0.62
Transmembrane Helix	140	159	0.74
Cytoplasmic	160	268	0.82
Transmembrane Helix	269	290	0.88
Non-Cytoplasmic	291	298	0.66
Transmembrane Helix	299	318	0.86
Cytoplasmic	319	435	0.89