YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31793068, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCCVLSFVVG FAMLGALTFV PIYLGYVDGA SATASGLRTL PMVIGLLIAS TGTGVLVGRT  60
   61 GRYKIFPVAG MALMAVAFLL MSQMDEWTPP LLQSLYLVVL GAGIGLSMQV LVLIVQNTSS 120
  121 FEDLGVATSG VTFFRVVGAS FGTATFGALF VNFLDRRLGS ALTSGAVPVP AVPSPAVLHQ 180
  181 LPQSMAAPIV RAYAESLTQV FLCAVSVTVV GFILALLLRE VPLTDIHDDA DDLGDGFGVP 240
  241 RAESPEDVLE IAVRRMLPNG VRLRDIATQP GCGLGVAELW ALLRIYQYQR LFEAVRLTDI 300
  301 GRHLHVPYQV FEPVFDRLVQ TGYAARDGDI LTLTPSGHRQ VDSLAVLIRQ WLLDHLAVAP 360
  361 GLKRQPDHQF EAALQHVTDA VLVQRDWYED LGDLSESRQL AATT

Type	Start	End	Confidence
Cytoplasmic	1	6	0.67
Transmembrane Helix	7	27	0.93
Non-Cytoplasmic	28	36	0.65
Transmembrane Helix	37	57	0.92
Cytoplasmic	58	64	0.64
Transmembrane Helix	65	84	0.92
Non-Cytoplasmic	85	93	0.66
Transmembrane Helix	94	115	0.92
Cytoplasmic	116	130	0.66
Transmembrane Helix	131	151	0.91
Non-Cytoplasmic	152	159	0.60
Transmembrane Helix	160	179	0.67
Cytoplasmic	180	196	0.58
Transmembrane Helix	197	218	0.90
Non-Cytoplasmic	219	404	0.61