YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIC55_PEA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.36
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALASANS FLLPTKTHFA LHVSPPPSKK TLLCTNPSSN FSFNKALSSR RRKQAWCVAA  60
   61 AADVKDATLL DGEEDQKVLV GPSSEQERKG EREVADYDWT EEWYPLYLTK NVPHDAPLGL 120
  121 KVYDKNIVLF RDGNDQFQCY EDRCPHRLAK LSEGQLIDGR LECLYHGWQF EGEGKCVKIP 180
  181 QLPADAKIPK SACVKTYEVR DSQGVLWVWM SRKTPPNVSK IPWFENFARP GFQDISTTHE 240
  241 LPYDHSILLE NLMDPAHVPI SHDRTDWSAK REDAQALGFE VTERTDRGFA GWWGREKDGS 300
  301 KPNFLRFEAP CVLQNNREIV DKNGEINHFS GLFLCRPTGQ GKSMLIVRFG ATKRSPLIKL 360
  361 FPEWYFHQNA SKVFEQDMGF LSSQNEILLK EKVPTKELYL NLKSSDTWVA EYRKWMDKVG 420
  421 HGMPYHFGHS TISLPEEPAV VEHAPAGLVA GLSASSPAKG GIGTMHAPNL ANRYFRHVIH 480
  481 CKGCSSAIKA FQIWKNVLSG VVVALAALAI LVSGRQWKVL LLASASLCSV GVYACSTAIA 540
  541 MNTTNFIRVH RRL

Type	Start	End	Confidence
Signal Peptide	1	17	0.36
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	443	0.66
Transmembrane Helix	444	458	0.31
Cytoplasmic	459	492	0.61
Transmembrane Helix	493	513	0.87
Non-Cytoplasmic	514	519	0.61
Transmembrane Helix	520	543	0.87
Cytoplasmic	544	553	0.66