YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7208777
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSKRFVFD TNKNMCMNFM ILMVMVSWFW LIPATSSSSL PQQQENQKLR FDQNGEFKIL  60
   61 QVADMHYADG KNTLCLDVLP SQNASCTDLN TTAFIQRTIL AEKPNLIVFT GDNIFGFDSS 120
  121 DSAKSMDAAF APAIASNIPW VAVLGNHDQE GSLSREGVMK YIVGMKNTLS KLNPPEVHII 180
  181 DGFGNYNLEV GGVQGTVFEN KSVLNLYFLD SGDYSKVPAI FGYDWIKPSQ QLWFERMSAK 240
  241 LRKAYIKGPV PQKEAAPGLA YFHIPLPEYA SFDSSNFTGV KMEPDGISSA SVNSGFFTTL 300
  301 VEAGDVKAVF TGHDHLNDFC GKLMDIQLCY AGGFGYHAYG KAGWSRRARV VVASLEKTDK 360
  361 GSWGDVKSIK SWKRLDDQHL TGIDGEVLWS KSFRGNHGKN QIGGN

Type	Start	End	Confidence
Cytoplasmic	1	14	0.93
Transmembrane Helix	15	34	0.92
Non-Cytoplasmic	35	405	0.99