YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28172994
Protein type:	Globular with Signal Peptide
Type Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAVAGTGY VGLSNAMLLA QNHQVVAVDI IKEKVELLNQ GKSPIVDKEI EHFFAKKVLN  60
   61 FTATLDKTLA YQGADFVIIA TPTDYDPNTN YFNTASVEAV IKEVMAINPN AVMVIKSTVP 120
  121 VGYTARIKQQ LGCENVLFSP EFLREGKALY DNLYPSRIIV GERSERAEVF ANLLLEGAEK 180
  181 TDVPVLFTDS TEAEAVKLFS NTYLAMRVAY FNELDSYAEA HGLDARQIIE GVGLDPRIGN 240
  241 HYNNPSFGYG GYCLPKDTKQ LLANYQEVPN NIIGAIVDAN RTRKDFIAES IIKRQPKVVG 300
  301 VYRLIMKAGS DNFRASSIQG IMKRIKAKGI EVVVYEPVLQ DAEFFHSRVV KDLNEFKKCS 360
  361 DVIVSNRMVE ELADVAEKVY TRDLFGSD

Type	Start	End	Confidence
Signal Peptide	1	20	0.60
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	388	0.99