YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564127
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEKPQALDST ENESICENNE HSRHSQESLC KIYTAGKNNE YIYIGRQKFL RDDLAVAFGG  60
   61 TLNPGLAPAP VHKFANPAPL GLSGFALTTF VLSLCNARAQ GVTTPNVVVG CAMFYGGLVQ 120
  121 LIAGIWEIAL ENTFGGTALC SFGGFWLSFA AIYIPWFGIL DAYKDKESDL GNALGFYLLG 180
  181 WALFTFGLCV CTMKSTIMFF ALFFLLAVTF LLLSIGNFTG EAGVTRAGGV VGVVVAFIAW 240
  241 YNAYAGVANR QNSYIMVHPF PLPSNDKVFF

Type	Start	End	Confidence
Cytoplasmic	1	53	0.85
Transmembrane Helix	54	71	0.40
Non-Cytoplasmic	72	77	0.39
Transmembrane Helix	78	97	0.81
Cytoplasmic	98	105	0.45
Transmembrane Helix	106	126	0.90
Non-Cytoplasmic	127	133	0.43
Transmembrane Helix	134	160	0.81
Cytoplasmic	161	169	0.52
Transmembrane Helix	170	191	0.87
Non-Cytoplasmic	192	196	0.41
Transmembrane Helix	197	218	0.88
Cytoplasmic	219	223	0.44
Transmembrane Helix	224	248	0.81
Non-Cytoplasmic	249	270	0.52