YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564914
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQEQDNGS GHYNKNRSSS QVSLDSLNSG THVEGHYPPE TYSLPQDNSS HEMLSKIYTG  60
   61 GTNNEYVFIG RQKFLASDLY AAFGGTLNPG LAPPSSHKFA NPAPLGLSAF ALTTFVLSMF 120
  121 NARAQGIQIP NLVVGLAMFY GGLIQLIAGI WEIALENTFG ATALCSFGGF WLSFGAIYIP 180
  181 WFGILDAYGD NKEELGNAVG FYLLGWCIFT FGLTACTMKS TVMLFALYFL LSITFLLLSI 240
  241 SNFTGNFKVQ RAGGVLGIIV AFISWYNAYA GIANNQNSYV LSHPFALPSN NKVIFS

Type	Start	End	Confidence
Cytoplasmic	1	73	0.78
Transmembrane Helix	74	92	0.50
Non-Cytoplasmic	93	101	0.56
Transmembrane Helix	102	122	0.85
Cytoplasmic	123	131	0.62
Transmembrane Helix	132	151	0.94
Non-Cytoplasmic	152	159	0.61
Transmembrane Helix	160	184	0.86
Cytoplasmic	185	194	0.73
Transmembrane Helix	195	217	0.86
Non-Cytoplasmic	218	223	0.63
Transmembrane Helix	224	244	0.92
Cytoplasmic	245	251	0.68
Transmembrane Helix	252	273	0.87
Non-Cytoplasmic	274	296	0.78