YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564978
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.99
Transmembrane Helix	63	85	0.89
Non-Cytoplasmic	86	92	0.68
Transmembrane Helix	93	112	0.89
Cytoplasmic	113	132	0.72
Transmembrane Helix	133	150	0.65
Non-Cytoplasmic	151	173	0.64
Transmembrane Helix	174	195	0.93
Cytoplasmic	196	204	0.79
Transmembrane Helix	205	225	0.93
Non-Cytoplasmic	226	258	0.91
Transmembrane Helix	259	280	0.88
Cytoplasmic	281	295	0.93
Transmembrane Helix	296	317	0.91
Non-Cytoplasmic	318	348	0.92
Transmembrane Helix	349	372	0.80
Cytoplasmic	373	395	0.93
Transmembrane Helix	396	417	0.91
Non-Cytoplasmic	418	426	0.83
Transmembrane Helix	427	450	0.89
Cytoplasmic	451	469	0.90
Transmembrane Helix	470	493	0.83
Non-Cytoplasmic	494	503	0.86
Transmembrane Helix	504	524	0.92
Cytoplasmic	525	581	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIQDSYRK DLEKIVSNSN TTSKDVENLD LSNQDDISSQ ESHLNIDGKH DGIRLKKELE  60
   61 ARHVSMIAIG GSLGTGLLIG TGTSLSLAGP VSILIAYSFV GFLVYIVMTC LGEMATYIPL 120
  121 DGFTSYASRY CDPALGFAVG YSYLFKYLII TPNQLTAAAL VLQYWVSREK VNPGVWITIF 180
  181 LVIIVTINVV GVKFFGEFEF WLSSFKVLVM LCLIVLLFVI MLGGGPSHDR LGFRFYKDPG 240
  241 AFRPYSEAIS GSKGKFVSFV AVFVYALFAY LGTELCGIVA AECKNPRRNV PRAIKLTLYR 300
  301 IVVFYLVTIF LLGMTVAYND PLLLQAKKKS TSAAASPFVV AIKNAGIPVL PHIFNACVLM 360
  361 FVFSACNSDL YVASRSLYGL AIDNKAPKIF AKTNKWGVPY NSLILCILFC LLAYMNVSSG 420
  421 SAQVFNYFVN VVSIFGLMSW IAILITYIYF DRALRAQGVD KSTLAYAAPL ASKGAYFALF 480
  481 FCCLIALIKN FTVFLGHKFD YKNFITGYIG IPVFIICFFG YKYIRGTKFV KPEEADLYTF 540
  541 KELIDLEEEE GKLWDAAQKE KMESSPKNFK WFYEKFLGWI F