YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71896205, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARCLRAVP ALSRAAGLSR CTPPAACTAL GPPGQRRHYA DRRIKVANPV VEMDGDEMTR  60
   61 IIWAFIKEKL ILPNVDVQLK YFDLGLPHRD KTDDQVTIDS ALATKKYSVA VKCATITPDE 120
  121 ARVEEFKLKK MWKSPNGTIR NILGGTVFRE PIICKNIPRL VPGWTQPITI GRHAHGDQYK 180
  181 ATDFVVNKSG TFKMVFTPKD GSGVKEWEVF NFPGGGVGMG MYNTDESISG FAHSCFQYAI 240
  241 QKKWPLYMST KNTILKAYDG RFKDIFQEIF DKHYKTEFDK LKIWYEHRLI DDMVAQVLKS 300
  301 SGGFVWACKN YDGDVQSDIL AQGFGSLGLM TSVLVCPDGK TIEAEAAHGT VTRHYREHQK 360
  361 GRPTSTNPIA SIFAWTRGLE HRGKLDSNPE LIKFAQTLEK VCVETVESGT MTKDLAGCIH 420
  421 GLANVKLNEH FVNTTDFLDA IKNTLDKALG KK

Type	Start	End	Confidence
Signal Peptide	1	28	0.85
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	452	0.99