YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18138061
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	86	0.97
Transmembrane Helix	87	108	0.76
Non-Cytoplasmic	109	129	0.80
Transmembrane Helix	130	152	0.82
Cytoplasmic	153	220	0.96
Transmembrane Helix	221	240	0.92
Non-Cytoplasmic	241	258	0.79
Transmembrane Helix	259	278	0.94
Cytoplasmic	279	285	0.85
Transmembrane Helix	286	307	0.90
Non-Cytoplasmic	308	335	0.92
Transmembrane Helix	336	355	0.95
Cytoplasmic	356	366	0.72
Transmembrane Helix	367	388	0.92
Non-Cytoplasmic	389	407	0.94
Transmembrane Helix	408	434	0.82
Cytoplasmic	435	455	0.94
Transmembrane Helix	456	479	0.90
Non-Cytoplasmic	480	487	0.82
Transmembrane Helix	488	510	0.89
Cytoplasmic	511	515	0.78
Transmembrane Helix	516	537	0.90
Non-Cytoplasmic	538	544	0.80
Transmembrane Helix	545	565	0.91
Cytoplasmic	566	585	0.85
Transmembrane Helix	586	602	0.48
Non-Cytoplasmic	603	615	0.38
Transmembrane Helix	616	637	0.56
Cytoplasmic	638	837	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDRIEEGSV RLLGSNSGGS SESRWVDGSE VDWDEDPPWS TKSKGSDGRE GYGSIRRRLV  60
   61 KKPKRVDSFD VEAMEISAAH DQHSKDLSLW STIALAFQTL GVVYGDMGTS PLYVFADVFS 120
  121 KVPINSDNDV LGALSLVMYT IALIPLAKYV FIVLKANDNG EGGTFALYSL ICRYANVNLL 180
  181 PNRQQADEQI SSFRLKLPTP ELQRALKIKE TLEKTSILKN VLLVLVLIGT SMIIGDGILT 240
  241 PAISVMSAIS GLQDQIDGFG TSEVVSISIV VLVALFNIQR FGTAKVGFMF APVLALWFFS 300
  301 LGSIGLYNML KYDITVVRAL NPAYIYYFFN NNGKSAWSAL GGCVLCITGA EAMFADLGHF 360
  361 TVPSIQIAFT FVVFPCLLLA YMGQAAFLMK NPALYSSVFY KSVPESLFWP VFVIATLGAM 420
  421 IASQAMISAT FSCVKQSMAL GCFPRLKIIH TSKKIMGQIY IPVINWFLMI MCIIVVYIFK 480
  481 STTDIANAYG IAEVGVMMVS TTLVTLVMLL VWQTNLFLAF SFLLVFGSVE LIYMSSVLSK 540
  541 IFEGGWLPLA FATFFLSVMY TWNYGSVLKY RREVREKISM DLMLDLSSNL GTVRVPGIGL 600
  601 LYNELVQGIP SIFLQFLLNL PALHSTIVFV CIKYVPIPVV PQEERFLFRR VCPKDYHMFR 660
  661 CVARYGYKDS RKEDHRAFEQ LLIESLEKFL RKEALEAALE DIDDLDSVSA DTRISDLTPD 720
  721 TAVDELKIPL MHGQNLEETG TSSSREASLT VLPSSYMSME EDPSLEYELS ALREAMDSGF 780
  781 TYLLGHGDVK AKKDSFFFKK LMINYFYAFL RKNCRGGTAN MKVPHTNIIQ VGMTYMV