YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HAK11_ORYSJ
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	65	0.90
Non-Cytoplasmic	66	83	0.87
Transmembrane Helix	84	106	0.90
Cytoplasmic	107	172	0.97
Transmembrane Helix	173	196	0.84
Non-Cytoplasmic	197	211	0.83
Transmembrane Helix	212	231	0.88
Cytoplasmic	232	240	0.66
Transmembrane Helix	241	262	0.91
Non-Cytoplasmic	263	289	0.84
Transmembrane Helix	290	308	0.88
Cytoplasmic	309	319	0.52
Transmembrane Helix	320	341	0.87
Non-Cytoplasmic	342	359	0.81
Transmembrane Helix	360	387	0.79
Cytoplasmic	388	407	0.88
Transmembrane Helix	408	432	0.84
Non-Cytoplasmic	433	440	0.81
Transmembrane Helix	441	462	0.91
Cytoplasmic	463	468	0.77
Transmembrane Helix	469	489	0.93
Non-Cytoplasmic	490	497	0.80
Transmembrane Helix	498	519	0.92
Cytoplasmic	520	530	0.94
Transmembrane Helix	531	554	0.86
Non-Cytoplasmic	555	572	0.75
Transmembrane Helix	573	590	0.87
Cytoplasmic	591	791	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSESEGT NRGSMWELDQ NLDQPMDEEA SRLKNMYREK KFSSLLLLRL AFQSLGVVFG  60
   61 DLGTSPLYVF YNAFPHGVDD EEDVIGALSL IIYTLTLIPL LKYVFVVLRA NDNGQGGTFA 120
  121 LYSLLCRHAK ISTIPNQHKT DEDLTTYSRQ TYEENSVGAK IKRWLEAHAY KRNCLLIVVL 180
  181 IGTCTAIGDG ILTPAISVLS ASGGIKVQNP NMSTDVVVIV SVIILIGLFS MQHYGTDKVG 240
  241 WLFAPIVLLW FILIGSVGAL NIHKYKGSVL KAYNPVYIYR YFQRRNSDSW ASLGGIMLSI 300
  301 TGTEALFADL CHFPVFAIQI AFTLIVFPCL LLAYTGQAAY IIAHKDHVAD AFYRSIPDSI 360
  361 YWPAFVIATA AAIVASQATI SATYSIIKQA LALGCFPRVK IVHTSKKFLG QIYIPDINWV 420
  421 LLILCIAVTA GFKNQSQIGN AYGTAVVIVM LVTTFLMVPI MLLVWKSHWI LVVTFIVLSL 480
  481 MVEIPYFSAC LLKIDQGGWV PLVIATAFFI IMYVWHFCTV KRYEFEMHSK VSMAWILGLG 540
  541 PSLGLVRVPG IGFVYTELAS GVPHIFSHFI TNLPAIHSVV VFVCVKYLPV YTVPMDERFL 600
  601 VRRIGPKNFH IFRCVARYGY KDLHKKDEDF EKMLFNCLLS FLRLESMMEG YSDSDDFSVP 660
  661 EQRTEGSISN AFLAEKTNNN TMCSNGDLSY SSQDSIVPVQ SPLRGNSLLR YSSQASHTVS 720
  721 DELEFLNRCK DAGVVHILGN TIVLARRDSG IIKKIAVNYM YAFMRKICRE NSVIFNVPHE 780
  781 SLLNVGQIYY I