YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HAK12_ORYSA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.98
Transmembrane Helix	45	68	0.82
Non-Cytoplasmic	69	83	0.89
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	173	0.88
Transmembrane Helix	174	196	0.60
Non-Cytoplasmic	197	211	0.47
Transmembrane Helix	212	234	0.82
Cytoplasmic	235	238	0.44
Transmembrane Helix	239	263	0.85
Non-Cytoplasmic	264	288	0.46
Transmembrane Helix	289	308	0.78
Cytoplasmic	309	314	0.30
Transmembrane Helix	315	341	0.80
Non-Cytoplasmic	342	358	0.42
Transmembrane Helix	359	387	0.77
Cytoplasmic	388	411	0.58
Transmembrane Helix	412	432	0.88
Non-Cytoplasmic	433	440	0.79
Transmembrane Helix	441	462	0.91
Cytoplasmic	463	468	0.76
Transmembrane Helix	469	489	0.94
Non-Cytoplasmic	490	497	0.82
Transmembrane Helix	498	519	0.92
Cytoplasmic	520	530	0.93
Transmembrane Helix	531	554	0.85
Non-Cytoplasmic	555	572	0.73
Transmembrane Helix	573	590	0.81
Cytoplasmic	591	793	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASISDSETT NHGSIWDLDQ NLDQPMDEEA SRLKNMYTEK KFSSILLLRL AFQSLGVVFG  60
   61 DLGTSPLYVF YNIFPHGVDD DEDVIGALSL IIYTLTLIPL MKYVFVVLRA NDNGQGGTFA 120
  121 LYSLLCRHAK VSTIPNQHKT DEELTTYSRQ TYEENSLAAK IKRWLEGHVY KKNCLLILVL 180
  181 IGTCTAIGDG ILTPAISVLS ASGGIRVQNQ KMSTDVVVVV AVIILIGLFS MQHYGTDKVG 240
  241 WLFAPIVLLW FILIGTIGAL NIHKYNSSVL KAYNPVYIYR YFRRGKSESW TSLGGIMLSI 300
  301 TGTEALYADL CHFPVLAIQI AFTLVVFPCL LLAYTGQAAY IISNKDHVVD AFYRSIPDTI 360
  361 YWPVFIIATL AAIVASQATI SATYSIIKQA LALGCFPRVS VVHTSKKFLG QIYIPDINWV 420
  421 LMILCIAVTA GFKNQSQIGN AYGTAVVIVM LVTTFLMVPI MLLVWKSHWI LVVIFIVLSL 480
  481 MVELPYFTAC INKVDQGGWV PLVVATTCFI IMYVWHFCTV KRYEFEMHSK VSMAWILGLG 540
  541 PSLGLVRVPG IGFVYTELAS GVPHIFSHFI TNLPAIHSVV VFVCVKYLPV YTVPTEERFI 600
  601 VKRIGPKNFH MFRCVARYGY KDIHKRDDDF EKMLLDRLLL FVRLESMMDD YSDSEDFTMM 660
  661 EEKTQGSSNA LLLTGKAGSN TMCSTGDLSY SSQDSIVPAK SPIRGNSLTR YSSQTFGDEL 720
  721 EFLNLEFLNR CKDAGVVHIL GNTVVHARPD SGIIKKVAVN YVFAFLRKIC RENSVIFNVP 780
  781 HESLLNVGQI YYI