YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7378667
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLVLSECG IRPLPRIYTT PRSTFLSNTT FKLKPSPAFR LNGFSTKNWA LNVTTPLTVD  60
   61 SSPPTSEEHE TQRFDPGAPP PFNLADIRAA IPKHCWVKNP WKSMSYVVRD VAIVFALAAG 120
  121 AAYLNSWLVW PLYWLAQGTM FWALFVLGHD CGHGSFSNDP RLNSVVGHLL HSSILVPYHG 180
  181 WRISHRTHHQ NHGHVENDES WHPMSEKIFK TLDRPTRFFR FTLPLVMLAY PFYLWARSPG 240
  241 KKGSHYNPDS DLFLPKERND VLTSTACWTA MAALLVCLNF VMGPMQMLKL YGIPYWINVM 300
  301 WLDFVTYLHH HGHEDKLPWY RGKEWSYLRG GLTTLDRDYG VINNIHHDIG THVIHHLFPQ 360
  361 IPHYHLVEAT EAAKPVLGKY YREPDKSGPL PLHLLGILAK SMKEDHYVSD EGDVVYYKAD 420
  421 PNLYGEVKV

Type	Start	End	Confidence
Cytoplasmic	1	105	0.99
Transmembrane Helix	106	127	0.85
Non-Cytoplasmic	128	132	0.58
Transmembrane Helix	133	152	0.65
Cytoplasmic	153	217	0.74
Transmembrane Helix	218	236	0.88
Non-Cytoplasmic	237	261	0.78
Transmembrane Helix	262	283	0.85
Cytoplasmic	284	429	0.72