YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHLG_AVESA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	18	0.83
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	99	0.84
Transmembrane Helix	100	121	0.73
Cytoplasmic	122	173	0.83
Transmembrane Helix	174	195	0.86
Non-Cytoplasmic	196	200	0.68
Transmembrane Helix	201	218	0.95
Cytoplasmic	219	226	0.81
Transmembrane Helix	227	246	0.91
Non-Cytoplasmic	247	256	0.66
Transmembrane Helix	257	277	0.89
Cytoplasmic	278	298	0.76
Transmembrane Helix	299	320	0.62
Non-Cytoplasmic	321	324	0.66
Transmembrane Helix	325	346	0.84
Cytoplasmic	347	356	0.70
Transmembrane Helix	357	376	0.75
Non-Cytoplasmic	377	378	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSHPLAAA AATSSSSATF RPPLRFLSSP PSSLTLNRRR SFPVVCAADA DAKETTKKPT  60
   61 IPDKAPAAGS SFNQLLGIKG AKQETNIWKI RLQLTKPVTW PPLVWGVLCG AAASGNFHWT 120
  121 VEDVTKSIVC MLMSGPCLTG YTQTINDWYD RDIDAINEPY RPIPSGAISE NEVITQIWVL 180
  181 LLGGLGLGAL LDIWAGHDFP IIFYLALGGS LLSYIYSAPP LKLKQNGWIG NFALGASYIG 240
  241 LPWWAGQALF GTLTPDIVVL TCLYSIAGLG IAIVNDFKSI EGDRTLGLQS LPVAFGMETA 300
  301 KWICVGAIDI TQLSVAAYLL STGKLYYALA LLGLTIPQVI LQFQYFLKDP VKYDVKYQAS 360
  361 AQPFFVFGLL VTALATSH