YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7433274, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWVLSECG LRPLPRIYPK PRIGSSSVCA TNLNLRRISP SPIRTDRNCW ALRVSAPLRI  60
   61 QIAGEEEEQT TNNGDEFDPG ASPPFKLSDI KAAIPKHCWV KNPWTSMSYV VRDVAIVFGL 120
  121 AAAAAYFNNW LVWPLYWFAQ STMFWALFVL GHDCGHGSFS NNHNLNSVAG HILHSSILVP 180
  181 YHGWRISHRT HHQNHGHVEN DESWHPLSEK LYNSLDDITK KFRFTLPFPL LAYPFYLWGR 240
  241 SPGKKGSHFD PSSDLFVASE KKDVITSTVC WTAMAALLVG LSFVMGPLQV LKLYGIPYWG 300
  301 FVMWLDIVTY LHHHGHEDKV PWYRGEEWSY LRGGLTTLDR DYGWINNIHH DIGTHVIHHL 360
  361 FPQIPHYHLV EATEAAKPVL GKYYKEPKKS GPLPFYLLGY LIKSMKEDHF VSDTGNVVYY 420
  421 QTDPNLYGSE K

Type	Start	End	Confidence
Cytoplasmic	1	108	0.97
Transmembrane Helix	109	127	0.87
Non-Cytoplasmic	128	134	0.54
Transmembrane Helix	135	155	0.55
Cytoplasmic	156	267	0.77
Transmembrane Helix	268	288	0.88
Non-Cytoplasmic	289	294	0.73
Transmembrane Helix	295	314	0.78
Cytoplasmic	315	431	0.86