YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28829841
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	55	0.77
Transmembrane Helix	56	76	0.90
Cytoplasmic	77	88	0.85
Transmembrane Helix	89	111	0.91
Non-Cytoplasmic	112	118	0.77
Transmembrane Helix	119	139	0.92
Cytoplasmic	140	146	0.95
Transmembrane Helix	147	170	0.89
Non-Cytoplasmic	171	179	0.92
Transmembrane Helix	180	199	0.95
Cytoplasmic	200	214	0.88
Transmembrane Helix	215	235	0.93
Non-Cytoplasmic	236	247	0.79
Transmembrane Helix	248	268	0.92
Cytoplasmic	269	279	0.77
Transmembrane Helix	280	300	0.92
Non-Cytoplasmic	301	306	0.75
Transmembrane Helix	307	327	0.89
Cytoplasmic	328	510	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMDFSLKT RIKKTIKGIT FEDLKVHLVL LSVCLVFSVF YIVAKLAMDN IPPFVFLMFR  60
   61 LVIATPLLWL MAIILSPDTV FKLPTKKEFI LLSISGIFSV TINQSLFLYG LYLSGATNAA 120
  121 IVQPLTPVFS AILAVLLKFE RKTKLKLYVR VIGVAIAVIG AVLMVDFTHL KSNDSNRNNI 180
  181 LFGNLCFLGN TLAYAIFLLS QKPLIDDGGM SASKCMAWSF TIGTPPVIAI ALLIAKSEIS 240
  241 SQVAQISLFG WLSVIYCAIF ATAYAFFASS WAVAKSDSTT VSVYLTVEPL LTGVLAYIFL 300
  301 SEILTPLNIV GGFVILFGVG AVMVSKYREN KKDALYKYEK QQYDINNGSI ELPPHSIDNN 360
  361 NNNNNNNNNN TGDIISNSIS HSSSENSFSK IIVSTSIISQ TDDDNNNNNN NNNNNNNNNN 420
  421 NNNNNNNNIN RNESINSSII NIRNSYGGGA DDYGADDSGF DESKNNLLSV FKKQSIISDD 480
  481 DRDDDQDEYN LDKSAGDDSI RVGSAGVLVF