YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60472232, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIQIISNH LVAGEIKQQK KAQPSATDFF DFDGLLTEKE LAIRKKAEKF AKEEINSLNI  60
   61 NEYYERAEFP LPIIERLKGL NWVGANIKGY GSPELTSMEL GLIAMEISKS SADIATFYTI 120
  121 LLNITMLAIY YSGSEQQKQY YLPKMTSLEK IGAFALTEPE AGSDAAGLKC TAKQLPNGAG 180
  181 WILNGEKRWI GNAPMADIIV IWARNIDTNK IHGFILEPSK VASGGDQLRI ETLQKKFAFR 240
  241 SVQNGHIFMK DCFIAEDQRL TNALDFNSGP GKCLFLTRIV VGWIALGVAS NAYEKCLQYV 300
  301 KQRNQFGQPL AQFQLVQERL VKMCSNIQAI SLMCHRVSQL FDQGKLSSGQ VGLLKAFSTS 360
  361 KAREVVSMAR ELFGGNGILL DDIGRNFLDM EGIYTFEGTY DVNTLIAARE ITGLSAISSI 420
  421 NHSKSQQQQK

Type	Start	End	Confidence
Cytoplasmic	1	113	0.53
Transmembrane Helix	114	131	0.52
Non-Cytoplasmic	132	430	0.98