YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17221150
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.97
Transmembrane Helix	40	62	0.92
Cytoplasmic	63	69	0.89
Transmembrane Helix	70	90	0.93
Non-Cytoplasmic	91	129	0.93
Transmembrane Helix	130	150	0.93
Cytoplasmic	151	156	0.85
Transmembrane Helix	157	177	0.90
Non-Cytoplasmic	178	192	0.86
Transmembrane Helix	193	214	0.89
Cytoplasmic	215	230	0.91
Transmembrane Helix	231	249	0.93
Non-Cytoplasmic	250	259	0.75
Transmembrane Helix	260	282	0.93
Cytoplasmic	283	289	0.92
Transmembrane Helix	290	309	0.93
Non-Cytoplasmic	310	316	0.68
Transmembrane Helix	317	335	0.91
Cytoplasmic	336	346	0.83
Transmembrane Helix	347	371	0.81
Non-Cytoplasmic	372	399	0.89
Transmembrane Helix	400	419	0.92
Cytoplasmic	420	483	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDPDHLNYV PLVPFNGTKP FGGDSLTQDL NIWYESGNVA WVMTSTALVL LMIPGVGFFY  60
   61 SGLARRKSAL SLIWLSMMAT AVVSFQWFLW GYSLAFSHTG GRFIGNLDNF GFKGLLGYPS 120
  121 IGSEKIPDLL FALYQGMFSA ITVALAIGAA AERGRMLPCV VFMFVWATLI YDPIACWTWN 180
  181 SSGWSFRMGG LDFAGGTPVH ISSGSAALAY SLMLGKRRGH GTHELNYRPH NVTHIVLGTV 240
  241 FLWVGWFGFN GGSALSGNMR AVMACVVTNL AASVGGITWC LLDYRLEQKW STVGFCSGVI 300
  301 AGLVAITPGS GYVPSWAAVI YGVVGGAACN YATKLKFVIG VDDALDIFAE HGVGGIVGNI 360
  361 LTAFFAADYI AHLDGSTEIN GGWLNGHYKQ LGYQVADSVA GFAYSFGGTC IILFIMNLIP 420
  421 GLSLRATEEA EILGIDDAEL GEFAYDYVEL TREVISDDDT VPKMSSENNA SVELPAERAE 480
  481 KSA