YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13235473
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADTNISDG LEVVTQDHLS IFSLISSSDI IGKSVMLMLL IASIWSWAII LDKIFKLVQV  60
   61 QKSMRAFENV FWSGGVLERL YESIKRSVNN PLALIFVLAM DECKSLSTKG LSEGLKNNHK 120
  121 ERITGAMYLA QNREVAKLEK NLSFLATVGS SAPFVGLFGT VWGIMHSFQS IATSKNTSLA 180
  181 VVAPGIAEAL LATAIGLFAA IPAVIFYNYL ISRITLINNK IEDFISELNS ILSKAIDQEK 240
  241 M

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.90
Transmembrane Helix	30	51	0.84
Cytoplasmic	52	141	0.96
Transmembrane Helix	142	164	0.92
Non-Cytoplasmic	165	188	0.85
Transmembrane Helix	189	211	0.91
Cytoplasmic	212	241	0.98