YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|929790
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.64
Transmembrane Helix	13	34	0.94
Cytoplasmic	35	52	0.60
Transmembrane Helix	53	67	0.61
Non-Cytoplasmic	68	94	0.79
Transmembrane Helix	95	117	0.86
Cytoplasmic	118	124	0.88
Transmembrane Helix	125	146	0.93
Non-Cytoplasmic	147	180	0.95
Transmembrane Helix	181	202	0.93
Cytoplasmic	203	214	0.84
Transmembrane Helix	215	236	0.92
Non-Cytoplasmic	237	251	0.89
Transmembrane Helix	252	269	0.94
Cytoplasmic	270	278	0.82
Transmembrane Helix	279	298	0.95
Non-Cytoplasmic	299	316	0.83
Transmembrane Helix	317	336	0.96
Cytoplasmic	337	355	0.88
Transmembrane Helix	356	378	0.92
Non-Cytoplasmic	379	396	0.87
Transmembrane Helix	397	416	0.97
Cytoplasmic	417	424	0.86
Transmembrane Helix	425	449	0.88
Non-Cytoplasmic	450	673	0.99
Transmembrane Helix	674	692	0.88
Cytoplasmic	693	714	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTLFIPEL GQLAMILALC FAIVQAIVPL LGAWRGDRLW MSLAQPALGP VRVPGVRFGC  60
   61 LTYAFMTDDF SVAYVASNSN SALPWYYKFS AVWGAHEGSL LLWAFILGGW TFAVSVFSRQ 120
  121 LPQVMLARVL AVMGMISIGF LLFLIMTSNP FERILPQIPV DGRDLNPLLQ DMGLIVHPPM 180
  181 LYMGYVGFSV AFAFAIAALL GGRLDAAWAR WSRPWTIVAW AFLGIGITLG SWWAYYELGW 240
  241 GGWWFWDPVE NASFMPWLVG TALIHSLAVT EKRGVFKSWT VLLAIAAFSL SLLGTFLVRS 300
  301 GVLTSVHAFA ADPERGVFIL IFLLCVVGGS LTLFALRAPV VKSHVGFNLW SRETLLLGNN 360
  361 LVLVVAASMI LLGTLYPLVL DALTGAKLSV GPPYFNALFI PLMGLLMVVM AIGVLVRWKD 420
  421 TPVKWLLGML TPVLLGSAAL SVIAGIPTAT STGPCSRLSC WRPGCYWPRA RYLRQDPPQG 480
  481 PDQRPADPDP QLLGYADRPH RHRRVCPGRG VVQPEQARAR LAPGPWRVHG SPGARRKSAL 540
  541 GAVLAGQHHA QGTHGDADVG DLHTPVTAGS RVGRPLIRPL WRMDLAGYQF VFEGAKHFEG 600
  601 PNFTSDKGTV RVVRNGKQIA VLHPEKRLYT VQSSMMTEAG IDAGFTRDLY VALGEPLGDG 660
  661 AWAVRVHVKP FVRWIWFGGL LTGFGGLLAA MDRRYRVKVK SRVREALGMQ GAAV