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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IGA1B_STREE
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKYFGEKQE RFSFRKLSVG LVSATISSLF FMSVLASSSV DAQETAGVHY KYVADSELSS  60
   61 EEKKQLVYDI PTYVENDDET YYLVYKLNSQ NQLAELPNTG SKNERQALVA GASLAALGIL 120
  121 IFAVSKKKVK NKTVLHLVLV AGIGNGVLVS VHALENHLLL NYNTDYELTS GEKLPLPKEI 180
  181 SGYTYIGYIK EGKTTSDFEV SNQEKSAATP TKQQKVDYNV TPNFVDHPST VQAIQEQTPV 240
  241 SSTKPTEVQV VEKPFSTELI NPRKEEKQSS DSQEQLAEHK NLETKKEEKI SPKEKTGVNT 300
  301 LNPQDEVLSG QLNKPELLYR EETIETKIDF QEEIQENPDL AEGTVRVKQE GKLGKKVEIV 360
  361 RIFSVNKEEV SREIVSTSTT APSPRIVEKG TKKTQVIKEQ PETGVEHKDV QSGAIVEPAI 420
  421 QPELPEAVVS DKGEPEVQPT LPEAVVTDKG EPAVQPELPE AVVSDKGEPE QVAPLPEYKG 480
  481 NIEQVKPETP VEKTKEQGPE KTEEVPVKPT EETPVNPNEG TTEGTSIQGA ENPVQPAEDT 540
  541 QTNSGKIANE NTGEVSNKPS DSKPPVEESN QPEKNGTATK PENSGNTTSE NGQTEPEPSN 600
  601 GNSTEDVSTK SNTSNSNGNE EIKQENELDP DKKVEDPEKT LELRNVSDLE LYSLSNGTYK 660
  661 QHISLEQVPS NPNSYFVKVK SSSFKDVYLP VASISEGRKN DKILYKITAK VEKLQQEIES 720
  721 RYKDNFTFYL AKKGTEETTN FTSFSNLVKA INQNLSGTYH LGASLNANEV ELSTDDKSYI 780
  781 KGTFTGQLIG EKDGKHYAIY NLKKPLFENL SGATVEKLSL KNVAISGKND IGSLANEATN 840
  841 GTKIKQVHVD GVLAGERGVG GLLAKADQSS IAESSFKGRI VNTYETTDSY NIGGLVGHLT 900
  901 GKNASIAKSK ATVTISSNTN RSDQTVGGLA GLVDRDAQIQ DSYAEGDINN VKHFGRVAGV 960
  961 AGNLWDRTSG DVRHAGSLTN VLSDVNVTNG NAITGYHYTG MKVANTFSSK ANRVFNVTLE1020
 1021 KNEVVSKESF EERGTMLDAS QIASKKAEIN LITPPIVEPL STSGKKDSDF SKIAHYQANR1080
 1081 ALVYKNIEKL LPFYNKATIV KYGNLVKENS ILYQKELLSA VMMKDDQVIT DIISNKQTAN1140
 1141 KLLLHYKDHS SEKFDLRYQA DFANLAEYSI GDSGLLYTPN QFLYHQDSII NQVLPELNRV1200
 1201 NYQSDAVRNT LGISPEVKLT ELYLEEQFTK TKEHLAENLK KLLSSDAGLV TDNEVMTGYI1260
 1261 IDKIKRNKEA LLLGMSYLER WYNFSYGQVN VKDLVMYHPD FFGKGNTSPL DTLIELGKSG1320
 1321 FNNLLAKNNV DTYAISLASH HGTTDLFSTL ENYRKVFLPD KTNNDWFKSQ TKAYIVEEKS1380
 1381 NIEEVKTKQG LVGTKYSIGV YDRITSATWK YRNMVLPLLT LPERSVFVIS TISSLGFGAY1440
 1441 DRYRNKEHQA NGDLNSFVEK SAHETAERQR DHYDYWYRIL DEKGREKLYR NILLYDAYKF1500
 1501 GTNHTEGKAT EVADFDSPNP AMKHFFGPVG NKVGHNGHGA YATGDAVYYM GYRMLDKDGA1560
 1561 ITYTHEMTHN SDQDIYLGGY GRRSGLGPEF FAKGLLQAPD QPSDATITIN SILKHSKSDS1620
 1621 KEGERLQVLD PTTRFKDATD LQKYVHNMFD VVYMLEYLEG KSIVKKLNVY QKIEALRKIE1680
 1681 NQYLTDPADG NDVYATNVVK NLTEDEAKKL TSFDSLIDNN ILSAREYKAG TYERNGYFTI1740
 1741 KLFAPIFSAL SGEKGTPGDL MGRRIAFELL AAKGFKDGMV PYISNQYEED AKQQGQTINL1800
 1801 YGKERGLVTD ELVLKKVFDG KYKTWAEFKT AMYQERVDQF GNLKQVTFKD PTKPWPRYGT1860
 1861 KTINNVDELQ KLMDEAVLQD AKERNYYYWN NYNPETDSAV HKLKRAIFKA YLDQTNDFRR1920
 1921 SIFENKK

YRC Informatics Platform - Version 3.0
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