YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21430608
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRKLHKNIQ ATGHLRQSGM AMRHLTAATM GVLLPVGVLG FVVLMQLMAS VRGHGRLMDP  60
   61 PARNAMWRFG YPNPVNYNDN ELFCGGYAVQ WEQNKGRCGI CGDAYHVKSP RPHEAGGQYA 120
  121 KGIISRYYTA GQTIDVEVEL TANHYGRFEM FLCPNNNPRQ EATQQCFDRY PLLISGSREH 180
  181 RYLIPRDAKK KDIFRYKVRL PPYVTCTQCV LQWTYYTANM WGTCANGTEA VGCGKAETFR 240
  241 NCADVAIVSN TGGGIPPPFV NNKSPYLLYY RDYRAPADNN IFPLIVRNAT RHARKQGKAK 300
  301 PPGR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	45	0.84
Non-Cytoplasmic	46	304	0.88