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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1870145
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKFFGEKQH RFSLRKLAIG LVSASISSLF FVSIASSGIV FAQENAAVHY KYVTDTELSS  60
   61 QEKDLIVKGI PKITEDSEST YYLVYRMDEK AQLGQLPNTG GQNSLTSVLT GGVLASIGLL 120
  121 IFVVSKKKGK KKALLKVVLI TGMGSGLASS VHAIENQLLL QYNQEYQLSQ GDSLPLPRAL 180
  181 SGYTYLGYIK QDKEINQQET AARDQKFDYT VQPHFQTNEG RQRAGDEQKA PSPTLPADKP 240
  241 IPSQDSSNQN PSGLASVDPQ DEVLAGRVNK PELLYKDQEI VTKLDVPELV QENPELTEGT 300
  301 IHVKQEGRAG KKVEVVRIFT VENQEISREV LSTKLEEALP RIVEKGTKKA VVPSEAPQSA 360
  361 KKGEPETQAP LPEYNGNQAG TIVAPEIAEK PEYTGTQAGA VVEPEQVAPL PEYQGTQAGA 420
  421 IVEPEQVEPE VGGVQSGALV EPETADKPTY TGEQSGAIVE PEQVPPTPEY KGTQAGAIVG 480
  481 PETTEKPEYT DTQSGAIVEP ETQSSLPEYT GEQSGAIVAP ETTEIPEYTG TQAGAVVEPE 540
  541 QVAPLPEYTG NTEQVKPEAP TEKPKEKDPE KTLELRNVSD LELYSQTNGT YKQHVSLDGV 600
  601 PSNPDTYFVK VTSSSFKDVY LPVASITAET KDGQPVYKIT AKAEKLQQEL ENKYVDNFTF 660
  661 YLAKKATEET TTFTSFSNLV KAINQNLSGT YHLAASLNAN EVELEPEAKS YIKGTFTGQL 720
  721 IGEKDGKQYA IYNLKKPLFE TLSGATVEKL SLKNVSISGK DDIGSLAYEA QNGTKIKQVH 780
  781 VDGVLAGERG IGGLLAKADQ SSITESSFKG RIINTYETTA AYNIGGLVGH LTGSRALLTK 840
  841 SKATVAISSN TNSSDQTVGG LAGLVDQDAQ IQDSYAEGDI NNAKHFGRVA GVAGYLWDRT 900
  901 SNLEKHAGSL TNVLSDINVT NGNAITGYHY NDMKVKDTFS SKANRVYNVT LVKDEVVSKE 960
  961 SFEERGTMLD ASQIESKKAA INPLTLPIVE PLSTSGKKDS DFSKVDHYQA KRDLAYKNIE1020
 1021 KLLPFYNKAT IVKYGNLVNE NSLLYQKELL SVVMMKDNQV ITDIVSNKET ANKLLLHYKD1080
 1081 HSYEKLNLKY QADFANLAEY SLGNTGLLYT PNQFLYDQSS IIKQVLPDLQ KVDYRSEAIR1140
 1141 KTLGISPKVE QTELYLEDQF AKTKEHLEDS LKKLLSADAG LAGDNPVTKG YLVDKIKRNK1200
 1201 EALLLGLTYL ERWYNFSYGQ VNVKDLVLYH LDFFGKGNAS PLDTLIELGK SGFNNLLAKN1260
 1261 NVDTYSISLA SHHGTTDLFS TLEHYRKVFL PNTSNNDWFK SETKAYIVEE KSNIAEVKAK1320
 1321 QEQAETKYSI GVYDRITSAT WKYRNMVLPL LTLPERLVFV ISTLSSLGFG AYDRYRNSEH1380
 1381 KAGKALNDFV EENARETAKR QRDHYDYWYR ILDEQSREKL YRTILLYDAY KFGDDTTSGK1440
 1441 ATLEAKFDSS NPAMKNFFGP VGNKVVHNQH GAYATGDGVY YMSYRMLDKD GAITYTHEMT1500
 1501 HDSDQDIYLG GYGRRSGLGP EFFAKGLLQA PDQPSDATIT INSILKHSKS DSTEGSRLQV1560
 1561 LDPTERFQNA ADLQNYVHNM FDLIYMLEYL EGQSIVNKLN VYQKMAALRK IENKYVKDPA1620
 1621 DGNEVYATNV VKELTEEEAR NLNSFDSLID HNILSAREYQ TGDYERNGYY TIKLFAPIFS1680
 1681 ALSSEKGTPG DLMGRRIAYE LLAAKGFKDG MVPYISNQYE EIAKQKGKTI NLYGKERGLV1740
 1741 TDDLVLEKVF EGKYASWADF KKAMYKERVD QFKNLKQVTF KDPTKPWPNY TTETINQVSE1800
 1801 LQALMDQAVL KDAVSPRWSN YNPEYDSAVH KLKRAIFKAY LDQTKDFRTS IFKK

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