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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|21483226
Protein type: Globular with Signal Peptide
Type Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTAMAMAAA ASSSAAAATA TTTAISNSTN TTASPATTNT INTTTKTITT SEVPLEPASN  60
   61 MAPKALEIED SGRNEPEDLE HGAAKPLEQR KTTVVHTCPR PPGGYKYSME FLYGIGSGMA 120
  121 GIPLNIPTPS SITPRTVRST APLLTTHMPL LTNMGVAPSR PSGIRYPGSA GGSNGTTVAA 180
  181 STTPSTTVTT SSGSPGSGAE AITSSVSSSG LPAAGLQAAQ FICQGYMPTG PQRRLWHAEN 240
  241 AVWQFDRNYP YNQAYSPPYG IPMMPVGFEH PYGQRIIYPG YYNQTPPGIN PAAVAGLTRT 300
  301 NRPVTQQPHI LTQPAVGTTE SSEEAPATLG NAPQVSSTWR YGRPGTHRGR HAVPTAAAPA 360
  361 LLHRDSKSFY NSIGSGMANG PRFKAPFVAN VRNFQAGAVA TVAAGGAATT AVVGTSAPAT 420
  421 GAASSSDQNV ATKRNHQGAA TQNNHRNRHN AKKGGKNSVG KELTSNSSES LSNSSSKSQL 480
  481 NKRPSSSSSI SPIKHPHRNY RNRMRYTATE PTEQKAATTT VPVSNYQPPQ QSTSTVRRTS 540
  541 KFQGSNAYQA HTAAGRQQSR FYQSRHMDGY VFQSGHYMVY AAGAPPVGLR AGKSPVSEAT 600
  601 GAPPGAAAAT AAAAAATAVA ATAAAAEGGG AAEGGGATAA PVTASSATLE GEQPLDSDFD 660
  661 QRQEFADLGL DPANGGFSSD LEPNGIKQDT SELDTHSCLI SHPNSEVDGD DNQSLASFAP 720
  721 SVESDDSDSE LSDASVESVA RDILVSCLAV ATGAEEPDFS GPNLVPYGDM HYLKELDKKN 780
  781 PPTNGYRSHR PYHQSHYAYH SQMSPRGLSC CGDMLNQHSE DLVFKLDQNQ PDGIESGKNI 840
  841 FLREITEQPD NISVASNLSC SPSASSSKSV LAPMASKSNI TMVGELKNVL LNGQITKFIS 900
  901 SKSYFFLSSV CLIVHFIRFT K

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle