YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46250096, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRDPSATI TGMVTTSSPN FSKVLEEQPL TLEQPMFLMT TTAQAISGFF VWTALLITCH  60
   61 QIYMHLRSYS CPNEQRHIVR ILFIVPIYAF DSWLSLLFFT NDQYYVYFDT VRDCYEAFVI 120
  121 YNFLSLCYEY LGGESNIMTE IRGKPIESSC MYGTCCLWGK TYSIGFLRFC KQATLQFCVV 180
  181 KPLMAAVTVI LQAFGKYRDG DFNVASGYLY VAIIYNISVS LALYALFLFY FATRELLSPY 240
  241 SPVLKFFMVK SVIFLSFWQG MLLAIMEKCG AIPKIDSAEV SVGEGTVAAG YQNFIICVEM 300
  301 FFAAIALRYA FTYKVYLDKR LDAQGRCAPM KSISSSLKET MNPHDIVQDA IHNFSPAYQQ 360
  361 YTQQSTLEQG TSWRNGQIIS RSQSVSGARD TEKTLLLSSD DEF

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.86
Transmembrane Helix	41	63	0.83
Cytoplasmic	64	77	0.85
Transmembrane Helix	78	99	0.83
Non-Cytoplasmic	100	147	0.65
Transmembrane Helix	148	162	0.27
Cytoplasmic	163	176	0.50
Transmembrane Helix	177	195	0.66
Non-Cytoplasmic	196	210	0.82
Transmembrane Helix	211	232	0.93
Cytoplasmic	233	245	0.81
Transmembrane Helix	246	266	0.85
Non-Cytoplasmic	267	288	0.89
Transmembrane Helix	289	311	0.85
Cytoplasmic	312	403	0.96