YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55251321
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASSYNAKE EDGHHSGTAG LGGTAIRTRK PDNTAFKQQR LPAWQPILTA GTVLPAFFVI  60
   61 GLIFIPIGIG LYVTSNNIKE FEIDYTGTDM SSPCFNCSQS FSWNSTTPCK CTLSFSLDQP 120
  121 FESNVFMYYG LSNFYQNHRR YVKSRDDSQL NGDERSLKEP SKECEPYRIN DNKRIAPCGA 180
  181 IANSMFNDTL DLFYIDPNGT KTQIPMIKKG IAWWTDKHVK FRNPGGNNPN LTAVFIDTAK 240
  241 PINWRKPVYE LDTDPENNGF INEDFIVWMR TAALPTFRKL YRIIQKKNNM TPTLPRGNYS 300
  301 LEVTYNYPVR SFEGRKRMIL STISWMGGKN PFLGIAYITV GSICFFLGVV LLFIHHKYGN 360
  361 RNNSSDIPS

Type	Start	End	Confidence
Cytoplasmic	1	46	0.59
Transmembrane Helix	47	73	0.82
Non-Cytoplasmic	74	332	0.59
Transmembrane Helix	333	355	0.93
Cytoplasmic	356	369	0.57