YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18416788, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGRDRDDP LSFTSNPSTA SSPVTVSDYL DNFLGEPTSR SGSFQSESLL GGGGGESIND  60
   61 ADFGFARPDF RSEQLAGTVQ FYERHVFLCY KKPSVWPARI EAAEFDRLPR LLSAAVSARK 120
  121 GSMKKETRLT ICEGHDGTET SNGDVLIFPD MIRYRRLTHF DVETFVEEVL VKDGEWLPGN 180
  181 PELLKGSYVF VCSHGSRDRR CGVCGPSLVS RFREELEFHG LQGKVSISPC SHIGGHKYAG 240
  241 NVIIYRSNIN REVTGHWYGY VTPEDVPILL EQHINKGEIV DRLWRGEMGL SEEDQKKTQE 300
  301 GRFQLNGTVH SVKINGKVSQ ESSVHNADVS CCQSRAAEPN GCCQQNGNSS SCCQDDTTLM 360
  361 LSLGTSEDNQ LESENNTEKL TPGRKIAEKT FFRINSDKGS STRKVCGIPT WLESWEREDT 420
  421 YAALAVVCAA ASVAVAYTCY KQL

Type	Start	End	Confidence
Non-Cytoplasmic	1	420	0.95
Transmembrane Helix	421	440	0.63
Cytoplasmic	441	443	0.55