YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29378339
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.84
Transmembrane Helix	19	42	0.89
Non-Cytoplasmic	43	150	0.79
Transmembrane Helix	151	170	0.62
Cytoplasmic	171	177	0.65
Transmembrane Helix	178	199	0.87
Non-Cytoplasmic	200	209	0.60
Transmembrane Helix	210	231	0.87
Cytoplasmic	232	239	0.86
Transmembrane Helix	240	261	0.91
Non-Cytoplasmic	262	269	0.82
Transmembrane Helix	270	290	0.92
Cytoplasmic	291	310	0.92
Transmembrane Helix	311	330	0.95
Non-Cytoplasmic	331	349	0.86
Transmembrane Helix	350	368	0.92
Cytoplasmic	369	376	0.79
Transmembrane Helix	377	397	0.94
Non-Cytoplasmic	398	403	0.76
Transmembrane Helix	404	428	0.80
Cytoplasmic	429	436	0.81
Transmembrane Helix	437	458	0.90
Non-Cytoplasmic	459	468	0.72
Transmembrane Helix	469	489	0.95
Cytoplasmic	490	532	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYRPWDVL QRFRQSRRLV LVIVFVALFL DNMLLTVVVP IVPNFLRKLE NPYLEVNRSK  60
   61 AELGVTEEPM YELRCQNISS WPRFSNATFG PGLILEHIKD SPRYYSHAYG RADQQEVCYN 120
  121 ESVWRNLSNV YMTVTEKSPR RADLDAENIE VGFMFASKAI MQLIANPFIG PITNRIGYTI 180
  181 PMFTGFFIMM VSTIIFAFGE TYAVLFAART VQGIGSSCSS VAGMGMIASY YPDDKERGNA 240
  241 MGIALGGLAL GVLVGPPFGG VMYEFAGKEA PFLILAGLAF LDGCLQLLAM QPSVKPESQE 300
  301 GTAFKELLRE PYILICAGAI TFGNMGIAMM EPSLPIWMYK TMHSSEWQQG IAFLPASISY 360
  361 ALGTNPFGPL AHRMGRWLSA MIGMIIVSIC CFALPFAKSL THLIAPNFGM GFAIGMVDSS 420
  421 MMPHMGYLVD LRHVSVYGSV YAIADVAFCL GFAIGPALSG TIVSRVGFHW MLWIIAIFNI 480
  481 LYAPLLYFLR NPPAKEEKMS LIMNEQCPVK YVTYNQNDKS PQSEEEYDYY EQ