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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RHD3_ARATH
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAACSTQLI DGDGVFNVSG VDHFIKEVKL DECGLSYAVV SIMGPQSSGK STLLNHLFGT  60
   61 NFREMDAFRG RSQTTKGIWI ARCAGIEPCT VVMDLEGTDG RERGEDDTAF EKQSALFALA 120
  121 VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTLMFVIRDK TRTPLENLEP 180
  181 VLREDIQKIW DSVPKPQAHK ETPLSDFFNV EVVALSSYEE KEEQFKEQVY NLRQRFFQSV 240
  241 APGGLAGDRR GVVPANAFAF SAKQMWQVIK DNKDLDLPAH KVMVATVRCE EIANEKFSSF 300
  301 IANENWRELE EAVQSGPVSG FGRKLSSILQ ASLSEYDTEA TYFEESVRSS KRQQLQEKLL 360
  361 QLVQPTFQDV LGHLRAGALE NFKNAFEKAL DAGEGFSSSA KSCAQSCISK FDKGCEEAVI 420
  421 EQAKWDTSKT REKLERDIEA HISSVRTAKL AELTTLYESK LNVALSGPVE ALLDGANDET 480
  481 WPAIRKLLRR EGELAVYGLS NALSGFEMDE ETRSKMLADL ENYARGIVET KAKEEAGRAM 540
  541 MRMKDRFATI FSHDSDSMPR VWTGKEDIRA ITKMARSASL KLLSVMAVIR LDDELDNIEK 600
  601 TLTLALFNST GNNATSKSIS TIDSLASSTW EKVAPEKTLI TPVQCKSLWR QFKNETEYTV 660
  661 TQAISAQEAN RRNNNWLPPP WAILALVVLG FNEFMTLLRN PLWLLVLFVG YLVSKALWVQ 720
  721 LNISGEFQNG VLPGLLSLST KFIPTVMNLL KKLAEEGQAP PTNSNQSMNS TAQSEVTTNG 780
  781 ESSSSSSSGS SPAKNVPIDT SA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle