YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22136416
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN  60
   61 RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR ARTKMAELGK AHAKALMPSF 120
  121 GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLXNLSME 180
  181 LRKKQSTYLK RLRLQKEDGA DLEMNLTGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE 240
  241 REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QIVASTVDDG LKQLQKAERT 300
  301 QRQKGMVMCA SVLVILCFIM LVLLILKEIL L

Type	Start	End	Confidence
Cytoplasmic	1	304	0.51
Transmembrane Helix	305	326	0.94
Non-Cytoplasmic	327	331	0.43