YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14091471
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	42	0.65
Non-Cytoplasmic	43	59	0.67
Transmembrane Helix	60	82	0.81
Cytoplasmic	83	147	0.74
Transmembrane Helix	148	172	0.81
Non-Cytoplasmic	173	187	0.61
Transmembrane Helix	188	210	0.85
Cytoplasmic	211	216	0.53
Transmembrane Helix	217	239	0.91
Non-Cytoplasmic	240	262	0.61
Transmembrane Helix	263	284	0.84
Cytoplasmic	285	290	0.44
Transmembrane Helix	291	317	0.78
Non-Cytoplasmic	318	338	0.57
Transmembrane Helix	339	364	0.81
Cytoplasmic	365	388	0.56
Transmembrane Helix	389	409	0.85
Non-Cytoplasmic	410	417	0.54
Transmembrane Helix	418	440	0.91
Cytoplasmic	441	446	0.54
Transmembrane Helix	447	467	0.92
Non-Cytoplasmic	468	474	0.55
Transmembrane Helix	475	496	0.93
Cytoplasmic	497	511	0.60
Transmembrane Helix	512	533	0.65
Non-Cytoplasmic	534	788	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLTYGKCWG SNKENSWKTI MVLAYQSLGV VYGDLSISPL YVFKSTFAED IHHSESNEEI  60
   61 FGVLSFVLWT LTLVPLFKYV FIVLRADDNG EGGTFALYSL ICRHAKVSLL PNRQASDEDV 120
  121 STYKMEHPPE TRSTSKVKTV LEKHKGLHTA LLVLVLLGTC MVVGDGLLTP AISVFTAVSG 180
  181 LESLMSQHHQ YAVVPITCFI LVCLFALQHY GTHRVGFFFA PIVLIWLLCI SALGLYNIFH 240
  241 WNPQVYKAIS PYYMYKFLKK TRLSGWMSLG GVLLCITGSE AMFADLGHFS YMAIQIAFTF 300
  301 LVYPTLILAY MGQAAYLSKH HENAAGISFY LSVPEKVKWP VFMVAILASV VGSQAIISGT 360
  361 FSIINQSQSL GCFPRVKVVH TSDKIHGQIY IPEINWILMI LCIAVTIGFR DTKHLGNASG 420
  421 LAVMTVMLVT TCLMSLVMIL CWHKPPILAL CFLLFFGSIE ILYFSASLVK FTEGAWLPIL 480
  481 LALFLMTIML VWHYATIKKY EFDLHNKVSL EWLLALGPSL GISRVPGIGL VFTDLTSGIP 540
  541 ANFSRFVTNL PAFHKVLVFV CVKSVPVPYV PPAERYLVGR VGPSTHRSYR CIVRYGYRDV 600
  601 HQDVDSFESE LVAKLEAFIR YDWTRGAHGA DPSSNEHDDA HSSGSNECRL SVIGNIRFSH 660
  661 EPPYEMDENP QPASVSIGLP SVESVTDIME MGPIKRRVRF ADDDEVSGGN EKEVGMRQEL 720
  721 EDLWDAQQSG TAFIIGHSHV RAKQGSSFLK RVAINCGYSF LRKNCRGPDV ALRVPPVSLL 780
  781 EVGMVYVV