YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37360156
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKKRRRQAA VTQAATPASG TPSSREDIMT QGKLSVANKA PGTEGQQHQA NGEKKDAPAV  60
   61 PSAPPSYEEA TSGEGLKAGT FPQGPTAVPL HPSWAYVDPS GSSGYEGGFP AGHHEHFTTF 120
  121 SWDDQKVRRL FIRKVYTILL VQLLVTLAVV ALFTFCDVVK DYVQANPGWY WASYAVFFAT 180
  181 YLTLACCSGP RRHFPWNLIL LTIFTLSMAY LTGMLSSYYN TTSVLLCLVI TALVCLSVTI 240
  241 FSFQTKFDFT SCQGVLFVLL MTLFFSGLLL AVLLPFQYVP WLHTVYAVLG AGVFTLFLAF 300
  301 DTQLLMGNRR HSLSPEEYIF GALNIYLDII YIFTFFLQLF GTNRE

Type	Start	End	Confidence
Cytoplasmic	1	134	0.99
Transmembrane Helix	135	156	0.93
Non-Cytoplasmic	157	167	0.87
Transmembrane Helix	168	187	0.92
Cytoplasmic	188	193	0.84
Transmembrane Helix	194	214	0.91
Non-Cytoplasmic	215	221	0.75
Transmembrane Helix	222	243	0.94
Cytoplasmic	244	253	0.83
Transmembrane Helix	254	274	0.95
Non-Cytoplasmic	275	281	0.75
Transmembrane Helix	282	305	0.85
Cytoplasmic	306	317	0.95
Transmembrane Helix	318	340	0.86
Non-Cytoplasmic	341	345	0.84