YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47937415
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHQLGTGR YQVLHNEEDN SESSAVEQPS TSSLAAPTVE AATSAPALDP DSPPPYSSIT  60
   61 VEAPTTSDTD VYSEFYPVPP PYSVATSLPT YDEAEKAKAA ALAAAAADAP QRNQEEDCTP 120
  121 RDDFSDVEQL RVGNDGIFML AFFMAFIFNW LGFCLSFCIT NTIAGRYGAI CGFGLSLIKW 180
  181 ILIVRFSDYF TGYFNGQYWL WWIFLVLGLL LFFRGFVNYL KVRNMSESMA AAHRTRYFFL 240
  241 L

Type	Start	End	Confidence
Non-Cytoplasmic	1	135	0.82
Transmembrane Helix	136	159	0.84
Cytoplasmic	160	162	0.74
Transmembrane Helix	163	183	0.81
Non-Cytoplasmic	184	197	0.83
Transmembrane Helix	198	218	0.93
Cytoplasmic	219	241	0.89