YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40788928
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	328	0.94
Transmembrane Helix	329	352	0.89
Cytoplasmic	353	395	0.96
Transmembrane Helix	396	419	0.88
Non-Cytoplasmic	420	426	0.82
Transmembrane Helix	427	448	0.92
Cytoplasmic	449	463	0.87
Transmembrane Helix	464	486	0.91
Non-Cytoplasmic	487	497	0.76
Transmembrane Helix	498	519	0.91
Cytoplasmic	520	549	0.91
Transmembrane Helix	550	572	0.89
Non-Cytoplasmic	573	582	0.79
Transmembrane Helix	583	608	0.87
Cytoplasmic	609	616	0.91
Transmembrane Helix	617	639	0.91
Non-Cytoplasmic	640	655	0.89
Transmembrane Helix	656	680	0.87
Cytoplasmic	681	692	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPLTGLVFP EIHLPGPAPA LRLVKAPSFG GGAVSEEDLG CCLRRFPFYF WSPPTDWLPW  60
   61 SLLLFSLMCE TSAFYVPGVA PINFHQNDPV EIKAVKLTSS RTQLPYEYYS LPFCQPSKIT 120
  121 YKAENLGEVL RGDRIVNTPF QVLMNSEKKC EVLCSQSNKP VTLTVEQSRL VAERITEDYY 180
  181 VHLIADNLPV ATRLELYSNR DSDDKKKEKD VQFEHGYRLG FTDVNKIYLH NHLSFILYYH 240
  241 REDMEEDQEH TYRVVRFEVI PQSIRLEDLK ADEKSSCTLP EGTNSSPQEI DPTKENQLYF 300
  301 TYSVHWEESD IKWASRWDTY LTMSDVQIHW FSIINSVVVV FFLSGILSMI IIRTLRKDIA 360
  361 NYNKEDDIED TMEESGWKLV HGDVFRPPQY PMILSSLLGS GIQLFCMILI VIFVAMLGML 420
  421 SPSSRGALMT TACFLFMFMG VFGGFSAGRL YRTLKGHRWK KGAFCTATLY PGVVFGICFV 480
  481 LNCFIWGKHS SGAVPFPTMV ALLCMWFGIS LPLVYLGYYF GFRKQPYDNP VRTNQIPRQI 540
  541 PEQRWYMNRF VGILMAGILP FGAMFIELFF IFSAIWENQF YYLFGFLFLV FIILVVSCSQ 600
  601 ISIVMVYFQL CAEDYRWWWR NFLVSGGSAF YVLVYAIFYF VNKLDIVEFI PSLLYFGYTA 660
  661 LMVLSFWLLT GTIGFYAAYM FVRKIYAAVK ID