YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40789043
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.83
Transmembrane Helix	20	42	0.87
Non-Cytoplasmic	43	78	0.60
Transmembrane Helix	79	101	0.82
Cytoplasmic	102	115	0.56
Transmembrane Helix	116	138	0.89
Non-Cytoplasmic	139	141	0.54
Transmembrane Helix	142	161	0.88
Cytoplasmic	162	170	0.50
Transmembrane Helix	171	192	0.84
Non-Cytoplasmic	193	230	0.49
Transmembrane Helix	231	253	0.94
Cytoplasmic	254	262	0.63
Transmembrane Helix	263	284	0.93
Non-Cytoplasmic	285	303	0.70
Transmembrane Helix	304	324	0.91
Cytoplasmic	325	340	0.72
Transmembrane Helix	341	360	0.67
Non-Cytoplasmic	361	364	0.82
Transmembrane Helix	365	385	0.94
Cytoplasmic	386	407	0.90
Transmembrane Helix	408	428	0.92
Non-Cytoplasmic	429	443	0.87
Transmembrane Helix	444	466	0.88
Cytoplasmic	467	480	0.82
Transmembrane Helix	481	499	0.92
Non-Cytoplasmic	500	508	0.67
Transmembrane Helix	509	529	0.65
Cytoplasmic	530	544	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPRSRDMTRE CPSPAPGPGA PLSGSVLAEA AVVFAVVLSI HATVWDRYSW CAVALAVQAF  60
   61 YVQYKWDRLL QQGSAVFQFR MSANSGLLPA SMVMPLLGLV MKERCQTAGN PFFERFGIVV 120
  121 AATGMAVALF SSVLALGITR PVPTNTCVIL GLAGGVIIYI MKHSLSVGEV IEVLEVLLIF 180
  181 VYLNMILLYL LPRCFTPGEA LLVLGGISFV LNQLIKRSLT LVESQGDPVD FFLLVVVVGM 240
  241 VLMGIFFSTL FVFMDSGTWA SSIFFHLMTC VLSLGVVLPW LHRLIRRNPL LWLLQFLFQT 300
  301 DTRIYLLAYW SLLATLACLV VLYQNAKRSS SESKKHQAPT IARKYFHLIV VATYIPGIIF 360
  361 DRPLLYVAAT VCLAVFIFLE YVRYFRIKPL GHTLRSFLSL FLDERDSGPL ILTHIYLLLG 420
  421 MSLPIWLIPR PCTQKGSLGG ARALVPYAGV LAVGVGDTVA SIFGSTMGEI RWPGTKKTFE 480
  481 GTMTSIFAQI ISVALILIFD SGVDLNYSYA WILGSISTVS LLEAYTTQID NLLLPLYLLI 540
  541 LLMA