YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLF_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEELEKSMH KEESLMEKIA DKIHDHDSSS SSDSEHEKPE SPSALKAKIY RLFGREKPVH  60
   61 KVLGGGLPAD VFLWRDKKLS ASVLGVATAI WVLFELVEYH FLSLVCHILI FALAALFLLS 120
  121 NAHAFMNKTP PKIPEIHIKE EHFLMIVSAL RNELNQAFVI LRSIALGRDL KKFLMVVFGL 180
  181 WIISVVGNWF NFLTLVYICF VVLHTVPMLY EKHEDKVDPV AEKTLKELKK HYMVFDEKVL 240
  241 SKLPVASLKA KLG

Type	Start	End	Confidence
Cytoplasmic	1	78	0.95
Transmembrane Helix	79	97	0.82
Non-Cytoplasmic	98	103	0.59
Transmembrane Helix	104	125	0.88
Cytoplasmic	126	172	0.88
Transmembrane Helix	173	200	0.79
Non-Cytoplasmic	201	253	0.79