YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMM19_PONAB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLNDNICK RYIKMITNIV ILSLIICISL AFWIMSMTAS TYYGNLRPIS PWRWLFSVVV  60
   61 PVLIISNGLK KKSLDHSGAL GGLVVGFILT IANFSFFTSL LMFFLSSSKL TKWKGEMKKR 120
  121 LDSEYKEGGQ RNWIQVFCNG AVPTELALLY MIENGPGEIP VDFSKQYSAS WMCLSLLAAL 180
  181 ACSAGDTWAS EVGPVLSKSP PRLITTWEKV PVGTNGGVTV VGLVSSLLGG TFVGIAYFLT 240
  241 QLIFVNDLDI SAPQWPIIAF GGLAGLLGSI VDSYLGATMQ YTGLDESTGM VVNSPTNEAK 300
  301 HIAGKPILDN NAVNLFSSVL IAVLLPTAAW GFWPRG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	37	0.89
Non-Cytoplasmic	38	50	0.76
Transmembrane Helix	51	69	0.78
Cytoplasmic	70	78	0.66
Transmembrane Helix	79	103	0.84
Non-Cytoplasmic	104	166	0.61
Transmembrane Helix	167	190	0.76
Cytoplasmic	191	211	0.44
Transmembrane Helix	212	240	0.76
Non-Cytoplasmic	241	254	0.41
Transmembrane Helix	255	276	0.87
Cytoplasmic	277	311	0.46
Transmembrane Helix	312	333	0.91
Non-Cytoplasmic	334	336	0.44