YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55729312
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVRPLFRS RFFPPPLSPP HVPPSSPSSL SPSLWRLQPT FASRQRPLAE ECPASSALQR  60
   61 RWLWRRRRRQ RRSRGSCQGQ PAGPLGGPPA SRGAAPRGSM AMNYNAKDEV DGGPPCAPGG 120
  121 SAKTRRPDNT AFKQQRLPAW QPILTAGTVL PIFFIIGLIF IPIGIGIFVT SNNIREIEID 180
  181 YTGTEPSSPC NKCLSPDVTP CICTINFTLE KSFEGNVFMY YGLSNFYQNH RRYVKSRDDS 240
  241 QLNGDSSALL NPSKECEPYR RNEDKPIAPC GAIANSMFND TLELFLIGND SYPIPIALKK 300
  301 KGIAWWTDKN VKFRNPPGGD NLKERFKGTT KPVNWLKPVY MLDSDPDNNG FINEDFIVWM 360
  361 RTAALPTFRK LYRLIERKSD LHPTLPAGRY SLNVTYNYPV HYFDGRKRMI LSTISWMGGK 420
  421 NPFLGIAYIA VGSISFLLGV VLLVINHKYR NSSNTADITI

Type	Start	End	Confidence
Cytoplasmic	1	142	0.61
Transmembrane Helix	143	169	0.84
Non-Cytoplasmic	170	423	0.57
Transmembrane Helix	424	445	0.94
Cytoplasmic	446	460	0.55