YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55729342\|emb\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPAMETAAE ENTEQSQERK VNSRAEMEIG RYHWMYPGSK NHQYHPVPTL GDRASPLSSP  60
   61 GCFECCIKCL GGVPYASLVA TILCFSGVAL FCGCGHVALA GTVATLEQHF STNASDHALL 120
  121 SEVIQLMQYV IYGIASFFFL YGIILLAEGF YTTSAVKELH GEFKTTACGR CISGMFVFLT 180
  181 YVLGVAWLGV FGFSAVPVFM FYNIWSTCEV IKSPQTNGTT GVEQICVDIR QYGIIPWNAF 240
  241 PGKICGSALE NICNTNEFYM SYHLFIVACA GAGATVIALI HFLMILSSNW AYLKDASKMQ 300
  301 AYQDIKAKEE QELQDIQSRS KEQLNSYT

Type	Start	End	Confidence
Cytoplasmic	1	77	0.98
Transmembrane Helix	78	100	0.91
Non-Cytoplasmic	101	128	0.91
Transmembrane Helix	129	151	0.89
Cytoplasmic	152	171	0.85
Transmembrane Helix	172	195	0.88
Non-Cytoplasmic	196	263	0.95
Transmembrane Helix	264	285	0.93
Cytoplasmic	286	328	0.95