YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55729820
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.88
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.87
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	246	0.80
Transmembrane Helix	247	270	0.87
Cytoplasmic	271	290	0.50
Transmembrane Helix	291	313	0.89
Non-Cytoplasmic	314	374	0.56
Transmembrane Helix	375	398	0.85
Cytoplasmic	399	403	0.54
Transmembrane Helix	404	426	0.89
Non-Cytoplasmic	427	452	0.55
Transmembrane Helix	453	474	0.90
Cytoplasmic	475	484	0.48
Transmembrane Helix	485	507	0.88
Non-Cytoplasmic	508	611	0.57
Transmembrane Helix	612	634	0.86
Cytoplasmic	635	646	0.84
Transmembrane Helix	647	665	0.96
Non-Cytoplasmic	666	679	0.86
Transmembrane Helix	680	701	0.95
Cytoplasmic	702	721	0.95
Transmembrane Helix	722	744	0.92
Non-Cytoplasmic	745	767	0.89
Transmembrane Helix	768	790	0.91
Cytoplasmic	791	881	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTRTRTRAP VSRAVFLADT QALTSLSLPA CRAATPKTSS GSQPRQEAAS LQTAPLRPPS  60
   61 QPPGPYPLAT AAAPAGTWKQ QEALGQDTLT VPTEYWTYGF RIHKALPPCI KDLFDIILGL 120
  121 YFLSSNIVLK NRISTFAIRE FFFFKYFSYS PMPKNSKVVK RELDDDVTES VKDLLSNEDS 180
  181 ADDAFKTSEL IVDGQEEKDT DVEEGSEVED ERPAWSSKLQ YILAQVGFSV GLGNVWRFPY 240
  241 LCQKNGGGAY LLPYLILLMV IGIPLFFLEL SVGQRIRRGS IGVWNYISPK LGGIGFASCV 300
  301 VCYFVALYYN VIIGWSLFYF SQSFQQPLPW DQCPLVKNAS HTFVEPECEQ SSATTYYWYR 360
  361 EALNISSSIS ESGGLNWKMT ICLLAAWVMV CLAMIKGIQS SGKIIYFSSL FPYVVLICFL 420
  421 IRALLLNGSI DGIRHMFTPK LEIMLEPKVW REAATQVFFA LGLGFGGVIA FSSYNKRDNN 480
  481 CHFDAVLVSF INFFTSVLAT LVVFAVLGFK ANVINEKCIT QNSQTIMKFL KMGNISQDII 540
  541 PHHINLSAVT AEDYHLVYDI IQKVKEEEFP ALHLNSCKIE EELNKAVQGT GLAFIAFTEA 600
  601 MTHFPASPFW SVMFFLMLVN LGLGSMFGTI EGIVTPIVDT FKVRKEILTV ICCLLAFCIG 660
  661 LIFVQRSGNY FVTMFDDYSA TLPLLIVVIL ENIAVCFVYG IDKFMEDLKD MLGFAPSRYY 720
  721 YYMWKYVSPL MLLSLLIASV VNMGLSPPGY NAWIEDKASE EFLSYPTWGL VVCVSLVVFA 780
  781 VLPVPVVFIV RRFNLIDDSS GNLASVTYKR GRVLNEPVNL EGDDTSLIHG KISSEMPSPN 840
  841 FGKNIYRKQS GSPTLDTAPN GRYGIGYLMA DIMPDMPESD L