YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197102204
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHHQPGTGR YQVLLNEEDN SESSAIEQPS TSNPAPQIVQ AASSAPALET DSSPPPYSSI  60
   61 TVEVPTTSDT EVYGEFYPVP PPYSVATSLP TYDEAEKAKA AAMAAAAAET SQRIQEEECP 120
  121 PRDDFSDADQ LRVGNDGIFM LAFFMAFIFN WLGFCLSFCI TNTIAGRYGA ICGFGLSLIK 180
  181 WILIVRFSDY FTGYFNGQYW LWWIFLVLGL LLFFRGFVNY LKVRNMSESM AAAHRTRYFF 240
  241 LL

Type	Start	End	Confidence
Non-Cytoplasmic	1	137	0.78
Transmembrane Helix	138	160	0.86
Cytoplasmic	161	163	0.70
Transmembrane Helix	164	184	0.79
Non-Cytoplasmic	185	198	0.81
Transmembrane Helix	199	219	0.93
Cytoplasmic	220	242	0.88