YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LBR_PONPY
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	209	0.99
Transmembrane Helix	210	233	0.90
Non-Cytoplasmic	234	257	0.92
Transmembrane Helix	258	277	0.92
Cytoplasmic	278	295	0.90
Transmembrane Helix	296	317	0.91
Non-Cytoplasmic	318	324	0.82
Transmembrane Helix	325	346	0.92
Cytoplasmic	347	386	0.97
Transmembrane Helix	387	406	0.70
Non-Cytoplasmic	407	413	0.58
Transmembrane Helix	414	436	0.72
Cytoplasmic	437	450	0.74
Transmembrane Helix	451	470	0.88
Non-Cytoplasmic	471	481	0.75
Transmembrane Helix	482	504	0.85
Cytoplasmic	505	522	0.86
Transmembrane Helix	523	543	0.61
Non-Cytoplasmic	544	551	0.67
Transmembrane Helix	552	576	0.83
Cytoplasmic	577	615	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRKFADGE VVRGRWPGSS LYYEVEILSH DSASQLYTVK YKDGTELELK ENDIKPLTSF  60
   61 RQRKGGSTSS SPSRRRGSRS RSRSRSPGRP PKSARRSASA SHQADIKEAR REVEVKLTPL 120
  121 ILKPFGNSIS RYNGEPEHIE RNDVPHKNTQ EKFNLSQESS YIATQCSLRP KREEVKLKEI 180
  181 DSKEEKFVAK ELAVRTFEVT PIRAKDLEFG GVPGVFLIMF GLPVFLFLLL LMCKQKDPSL 240
  241 LNFPPPLPAL YELWETRVFG VYLLWFLIQV VFYLLPIGKV VEGTPLIDGR RLKYRLNGFY 300
  301 AFILTSAVIG TSLFQGVEFH YVYSHFLQFA LAATVFCVVL SVYLYMRSLK APRNDLSPAS 360
  361 SGNAVYDFFI GRELNPRIGT FDLKYFCELR PGLIGWVVIN LVMLLAEMKI QDRAVPSLAM 420
  421 ILVNSFQLLY VVDALWNEEA LLTTMDIIHD GFGFMLAFGD LVWVPFIYSF QAFYLVSHPN 480
  481 EVSWPMASLI IVLKFCGYVI FRGANSQKNA FRKNPSDPKL AHLKTIHTST GKNLLVSGWW 540
  541 GFARHPNYLG DLIMALAWSL ACGFNHILPY FYIIYFTMLL VHREARDEYH CKKKYGVAWE 600
  601 KYCQRVPYRI FPYIY