YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM10_CANGA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	464	0.78
Transmembrane Helix	465	486	0.87
Non-Cytoplasmic	487	490	0.68
Transmembrane Helix	491	511	0.90
Cytoplasmic	512	518	0.76
Transmembrane Helix	519	539	0.85
Non-Cytoplasmic	540	544	0.78
Transmembrane Helix	545	569	0.82
Cytoplasmic	570	584	0.76
Transmembrane Helix	585	606	0.93
Non-Cytoplasmic	607	621	0.73
Transmembrane Helix	622	640	0.86
Cytoplasmic	641	647	0.56
Transmembrane Helix	648	666	0.81
Non-Cytoplasmic	667	672	0.68
Transmembrane Helix	673	691	0.87
Cytoplasmic	692	697	0.58
Transmembrane Helix	698	716	0.75
Non-Cytoplasmic	717	752	0.86
Transmembrane Helix	753	776	0.88
Cytoplasmic	777	786	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSGDKDVS KSVRFDKESI ESKKRSSVDD SASSYSSSSS GQDRSEGKRN NVKFSTEDSD  60
   61 DEDGNLFSRM IKNLKSNGGA GLAPGLSKAN SNQEKTDLED NDNVVTGHSD DIPMEDFTSE 120
  121 AQNILQGHSN LTPAQIEALN GQGLSDIETT ASSTDLNFLA PAIDHFDDFD GDGEEENDGF 180
  181 VDTHGYVAPP TQVRGGVLGS LLKLYQEQDN ATIETSSMYS QSSYGESTAN LMSIDSGETE 240
  241 VPSEHKPKDH KNVFMRSGGK VAGLAMNAPG QIYGHGSKAA GHIYGHGRKG AGHIYNQGKK 300
  301 GAGHIYSQKN KLSSADLSTE GLKKSGHKAK KVAGKMPKLR KRMLAEAKIT VHIAELLQRQ 360
  361 RFILRMCKAL MLYGAPTHRL EEYMIMTSRV LEIDGQYLYL PGCMIVSFGD ATTRTSEVQL 420
  421 VRCTQGLNLW KLHQVHGVYK KVIHDQMGAD EGNIEIDRIL REKNLYPPWV CVFLYGFCSA 480
  481 MVTPYAFGGH WINLAITFFM GSCVGMMQFI LSEKSLMYSN VFEITASIVV SFCGRAFGSI 540
  541 PNSNICFGAI TQGSLALILP GYIILCGSLE LQSRSLVAGS VRMFYAIIYS LFLGFGITLG 600
  601 AALFGWMYKG ATNEISCGYP ISPWFRFLFV PAFTIGISLI NQANWTQLPA MVFISCTGYV 660
  661 VTYWSGKHFQ NSTEFTAALA SFVIGILGNL YSRIWQGLAV SAMLPAIFVQ VPSGIASQNS 720
  721 LLSGLQSANQ IVGRNGTNAV QTVDLSNSMS FGITMIEVSI GISVGLFAST LCVYPFGKKK 780
  781 TGLFSL