YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50291859, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.96
Transmembrane Helix	12	35	0.91
Cytoplasmic	36	54	0.94
Transmembrane Helix	55	76	0.90
Non-Cytoplasmic	77	86	0.81
Transmembrane Helix	87	107	0.93
Cytoplasmic	108	133	0.89
Transmembrane Helix	134	155	0.91
Non-Cytoplasmic	156	163	0.74
Transmembrane Helix	164	184	0.93
Cytoplasmic	185	193	0.74
Transmembrane Helix	194	213	0.94
Non-Cytoplasmic	214	252	0.94
Transmembrane Helix	253	275	0.84
Cytoplasmic	276	288	0.75
Transmembrane Helix	289	314	0.77
Non-Cytoplasmic	315	350	0.81
Transmembrane Helix	351	378	0.68
Cytoplasmic	379	396	0.90
Transmembrane Helix	397	421	0.87
Non-Cytoplasmic	422	426	0.83
Transmembrane Helix	427	449	0.89
Cytoplasmic	450	454	0.85
Transmembrane Helix	455	476	0.90
Non-Cytoplasmic	477	494	0.89
Transmembrane Helix	495	516	0.93
Cytoplasmic	517	609	0.99
Transmembrane Helix	610	632	0.88
Non-Cytoplasmic	633	643	0.91
Transmembrane Helix	644	668	0.87
Cytoplasmic	669	724	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEFKAPLPQ GAGYAIVLGL GTVFAVGMIL TTYMLRRYQK EIITAEEFTT AGRTVKTGLV  60
   61 AAAVVSSWIW CSTLLTSASK QLDGMLGGYS YSAGACFQIV AFAILAIKTK QKAPNAHTYL 120
  121 ELVRKRYGKI GHCCYLFYAF ATNILVTAML LTSGAAVFES MTGMNSVASC FLLPVGVVIY 180
  181 TLFGGIKATF LTDFIHTCVI IVIIMVFAFK VYATSDVLGS PGKVYDLVRE AAKRHPVPHN 240
  241 AQGEYLTMSS RSGGIFLIIN LVGNFGTVFL DNGYWNKAIS ASPAAALPGY VMGGLAWFAV 300
  301 PALLSVTMGF ACLATETLKS FPTYPDPLTP EQVSAGLVLP AAAVSVMGKG GAVATCLMVF 360
  361 MAVTSAMSAE LIAVSSVFTY DIYRIYINPS ADGKRLIYSS HFACVVFGLC MSGFSVGLYY 420
  421 AGVNLGYLYE LMGIIISSAV LPVVLTLCWK GQNIIAAVVS PILGTALAIM SWLVCTKSLY 480
  481 GEITLATSFE DYPMLTGNLV ALLSPAIFIP ILTFLFKPQN YDMELFKEIS RVDETKEILE 540
  541 AYPEIEPIIS KTQIAHESEG SLIESDYNKE DEKDAVTHIK TTEKHELDRI DTENLSEYDA 600
  601 QEEKKLKRAL NWAYFLCIFF ALAFLVVWPM PMYGTKYIFS KRFFTGWVVV MIIWIFISAF 660
  661 CVCVFPVWEG RHGIYTTCRG IYWDLTGQSY KLKEWQETNP SELHVVQSQK SIRPKISRID 720
  721 DLIE