YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49527695
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNETFNELFP YLNQSSHSLL ANDNPLARFP NVLYRLSLSF HDAINSQYME VWSGQEISST  60
   61 LQSFNDIIGF FFSEYSVLCF TIAVLLNRLI TTISRRNRVN RANLRPEINT LSHVSCILLL 120
  121 TWVMYELIEG LIKVKIYNAD VPKIPLSLYF MVFSWSYCVE TVISLLSNST PLEGSDYTIF 180
  181 EISIEFYLLQ RKRINIIDQT EFLPDCLMAI SNRVMIHVLE MYKMRNYRLL GSASLNLVHI 240
  241 TYLMYVSIKY GVSSIPILTR FRHFPKVFSL FIVLISLVSY LLAYIIRFDP FTNKNRNPDE 300
  301 LQFYSFMKNW RKHLNFTGEE DFSPMLSKLA ILLTSASSIS ERGTRYEYPS VNINHELDTR 360
  361 YNEKLRAIQQ VRFNETPRNG RRESVVRALT KPILEAKQNI PFLSNMLDSF KLVLVHLCEI 420
  421 LRGNEEAEYI DTDDSDADKE VSETPTRRFS LSKDTSWYDD SYSEDEDYQD SDATELSLEE 480
  481 DLADDDILEL RDDMSTLLQD ELDPLMLQDH LLHSRLTRSG LHKRHQEPSL GQVSDNREDT 540
  541 RDYSCVVCKT NDRNVIMWPC SCFAVCDDCR VSLSVRGFNT CVCCRAPVSG HSKTHAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	66	0.86
Transmembrane Helix	67	90	0.84
Cytoplasmic	91	109	0.85
Transmembrane Helix	110	128	0.65
Non-Cytoplasmic	129	145	0.59
Transmembrane Helix	146	166	0.54
Cytoplasmic	167	266	0.57
Transmembrane Helix	267	286	0.96
Non-Cytoplasmic	287	597	0.67