YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50292375, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.38
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	15	0.38
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	83	0.77
Transmembrane Helix	84	106	0.85
Cytoplasmic	107	113	0.59
Transmembrane Helix	114	136	0.87
Non-Cytoplasmic	137	151	0.70
Transmembrane Helix	152	173	0.86
Cytoplasmic	174	273	0.83
Transmembrane Helix	274	298	0.81
Non-Cytoplasmic	299	317	0.69
Transmembrane Helix	318	340	0.89
Cytoplasmic	341	364	0.75
Transmembrane Helix	365	387	0.65
Non-Cytoplasmic	388	409	0.63
Transmembrane Helix	410	432	0.90
Cytoplasmic	433	455	0.73
Transmembrane Helix	456	473	0.64
Non-Cytoplasmic	474	490	0.62
Transmembrane Helix	491	511	0.88
Cytoplasmic	512	521	0.73
Transmembrane Helix	522	540	0.86
Non-Cytoplasmic	541	558	0.78
Transmembrane Helix	559	581	0.89
Cytoplasmic	582	588	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFWWIVTLA NLCAAHMHMD DDEDMSNEMG MGVSDTNLTP VPHEPKHLHG QPILDTHLTP  60
   61 AERLYWEKYD TTTFFTTDLG NRSAFKFHVA TMFILLFLSY PVCLILNSVA SSWYLAALTA 120
  121 NLALTVASLI SLLVFSTTFP EEWYANNFYH KTSWTVLILM LVHYIAAVGT LAAKRFGSGY 180
  181 VSLDIETVAY PLQDYDNYEI PDVVVNDGNT EDPSRLSPPT TVTPNDDTQE SSLSHSHSEE 240
  241 SLRFTDDSHK KPRKDKLLNK IPVNSKLQTI MDKFGVFFGI IFGFLNYPML LILFVDACTG 300
  301 IAIGNLLGKG PRVFNLLAHW IKGGVFFVLG IVSLARYCGV GQKYGWAWNR LIIDRRSPYA 360
  361 NSVWFKYSPI GGITMEGFES FLIFFYGSTN VFLEHLAGAG GAWTAKDLQH VSIAFMFFGT 420
  421 GLCGLLVEGF LNKWRFTHAL VRTDYKEEEV LVANPGYSPN PFPTFTIFWT GILMSQHAQA 480
  481 SETSTTIHVQ WGSLLSYGSF FRLFTFLILY FSPEVNMEPF KPITELVSSF CLLAGGLIFM 540
  541 ESTDQVVEGF EYRGFTPMFT FNISVGIVSL IMAWEMILLF WRRYLASN