YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50302413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	113	0.99
Transmembrane Helix	114	132	0.94
Non-Cytoplasmic	133	154	0.85
Transmembrane Helix	155	176	0.95
Cytoplasmic	177	186	0.86
Transmembrane Helix	187	207	0.92
Non-Cytoplasmic	208	212	0.87
Transmembrane Helix	213	233	0.94
Cytoplasmic	234	245	0.85
Transmembrane Helix	246	267	0.83
Non-Cytoplasmic	268	278	0.81
Transmembrane Helix	279	299	0.92
Cytoplasmic	300	365	0.96
Transmembrane Helix	366	388	0.84
Non-Cytoplasmic	389	401	0.82
Transmembrane Helix	402	421	0.93
Cytoplasmic	422	431	0.80
Transmembrane Helix	432	453	0.93
Non-Cytoplasmic	454	460	0.73
Transmembrane Helix	461	483	0.87
Cytoplasmic	484	495	0.78
Transmembrane Helix	496	519	0.76
Non-Cytoplasmic	520	526	0.76
Transmembrane Helix	527	546	0.76
Cytoplasmic	547	677	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSTDKDRH NKNSSRGIVN TDIEDDNSPS PLDTTDKKGA PELQKPGNPS LFKESALKNS  60
   61 DQLQFRNSFN IPNAVGGTNG IVIPPNVQPL DQQRIPPSYT DHLQVKDTYL TGRTLLYFTS 120
  121 IFVSLGVFLF GYDQGVMSGI ITGPYFKTYF NNPTAATIGT MVSILEIGAL VSSLLVSNIG 180
  181 EKFGRRFTIK YGSLIFILGG LVQTFSWEMG HMIFGRIISG IGVGLLSTIV PIYQSEISPP 240
  241 HNRGKLACIE FTGNIVGYAS SVWVDYACSY IESDTSWRLP LFIQCVMGLL LFLGSFVIVE 300
  301 TPRWLLNHDH DIEGLVVIAD LHSDGDVLHS KAHEEYKLIK ETVLISRLEG EKKSLRFAFK 360
  361 RYRTRMLIAM SSQMFAQLNG INVISYYAPL VFEQAGWVGR EALLMTGINS IIYILSTILP 420
  421 WKLVDKWGRK PILLSGALVM GTSLLAIAMS LWANVAATPR LVVVFVIIFN AFFGYSWGPI 480
  481 PWLYPVEIAP AMARSAMASA STATNWLFNW LVGIMTPILQ EKIHWRMYLI HTVSCYLSFW 540
  541 CVLKVYPETA GLRLEDMDSV FDDRSSTFSF QSGTSAEIEQ QSHLVSGGGE VAPSTRSRKS 600
  601 VYSNAQSMFN KDEIQPPTLT QVLQWKEERT QTKPLKKFIR RGSETVCLIY NKVRNLRSTN 660
  661 DTNQIEYGAV SNNQPPN