YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49640537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIQLLSYAG TVLGFIFLTL STASGLYYLS ELVEEYTEPT RRLLYRAIYT IIGIYVLLLL  60
   61 FDGFPWLLTA FSIFTYVVYL QNMKHFPYIS LTNPTLMLSC VLVLINHYLW FKYFNDVDIP 120
  121 PQFRFDPNYV PRRRASFAEV ASFFGICVWF IPFALFVSLS AGENVLPTHI ERKKNEDGDG 180
  181 AESSRGVRRR AKGLAKIVID YIREYFYSIG KLFGLKDSKK DEGLLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.70
Transmembrane Helix	8	29	0.92
Cytoplasmic	30	46	0.71
Transmembrane Helix	47	70	0.84
Non-Cytoplasmic	71	88	0.63
Transmembrane Helix	89	110	0.88
Cytoplasmic	111	139	0.68
Transmembrane Helix	140	162	0.84
Non-Cytoplasmic	163	226	0.75