YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22655170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.81
Transmembrane Helix	24	44	0.84
Non-Cytoplasmic	45	77	0.67
Transmembrane Helix	78	97	0.81
Cytoplasmic	98	111	0.78
Transmembrane Helix	112	134	0.92
Non-Cytoplasmic	135	140	0.81
Transmembrane Helix	141	163	0.90
Cytoplasmic	164	178	0.81
Transmembrane Helix	179	199	0.87
Non-Cytoplasmic	200	214	0.77
Transmembrane Helix	215	240	0.85
Cytoplasmic	241	251	0.80
Transmembrane Helix	252	271	0.91
Non-Cytoplasmic	272	303	0.53
Transmembrane Helix	304	326	0.88
Cytoplasmic	327	339	0.45
Transmembrane Helix	340	364	0.85
Non-Cytoplasmic	365	371	0.41
Transmembrane Helix	372	391	0.52
Cytoplasmic	392	398	0.38
Transmembrane Helix	399	420	0.90
Non-Cytoplasmic	421	801	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTTTKNVC GDKWYLNLDR PEEALKILVF IAIFVVRTLL HYLMKPLGQP YLTTDFAIGL  60
   61 ILGNIPRFRG AFSGPYSITL NNIIEFGMIC HMFVMGLEMN PSVLLRPPTK DAFIAYTSMI 120
  121 TTFVLAFVTT PFLHYTKTSP YIFSLALSLM ASSTGSPILT RVIANLKIRK SDLGKLASAA 180
  181 GVHTDMISTL LYCFGFIFFP TEKPLARPLH RFFRALLMFC LFLAQVTFTS IVSPIFLNWV 240
  241 NNENPEGKPL KGSHLVMSLA FVVLICSFPT WPPELMYNPI LSAFTAGLFL PNKGRMSKWI 300
  301 INKINYLLST VFYPIFFFWV GFIIHMRNFD ITDKMAWVRF FSLLGTVIAG KVTGTVLCGL 360
  361 LLGYHVPETA SLGLLLTTKG HFHVYLAALA IRTNRVKSTT GALIIFIIVF TVVYSPFVVM 420
  421 DIIKRARKRV PVHIMALQWL DPTTELRILI GLHGPHNIGS TLNVMEICHG GREPGSIFYA 480
  481 TDMVELTDEI AATLKKGGGA GQSNDSVTVT DRSVTEMRES ITAAVNGYGE LRNGQGVTVR 540
  541 RMLALSTFVT MAHDVCGLAD ELMVSIIILP FHKRLNPDGT LDAGHAGFRH VNRKILENAP 600
  601 CSVGILVDRS FGQTEEAWRP GASMGIAIIF IGGRDDREAL AFAAQVARHP AVKLKVIRFL 660
  661 EDKSSQNAQK RSSILNRASV VDQEEEMKLD DECFAEFYER YIAGGGRVSY MEKHLTNSSE 720
  721 TFTALKSLDG EYGLVIVGRG GGRASSGLTT GLNDWQQCPE LGPIGDVLSG SDFSHNTSML 780
  781 IIQQQRTRGQ LEGLHDDFTI L